STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_059555-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology (231 aa)    
Predicted Functional Partners:
CN09_05950
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.897
CN09_20815
Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.793
CN09_08665
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
 
    0.780
CN09_20645
Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.745
CN09_28450
Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
CN09_32715
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.711
CN09_08000
Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.689
dusA
tRNA-dihydrouridine(20/20a) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily
  
    0.687
CN09_11880
UPF0260 protein CN09_11880; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0260 family
       0.652
CN09_12180
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.640
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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