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CN09_05975 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05975" - Transcriptional regulator in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05975Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (148 aa)    
Predicted Functional Partners:
CN09_05970
Guanylyl cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (352 aa)
 
          0.890
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family (367 aa)
              0.712
CN09_30580
SAM-dependent methlyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
 
          0.619
uvrB
UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] (944 aa)
              0.587
CN09_14580
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (469 aa)
 
          0.580
CN09_02580
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
 
          0.578
CN09_21160
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (437 aa)
 
          0.556
CN09_14380
Cold-shock protein; Derived by automated computational analysis using gene prediction method- Protein Homology (109 aa)
 
          0.548
CN09_30595
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (112 aa)
   
          0.536
CN09_30585
Regulatory protein; Derived by automated computational analysis using gene prediction method- Protein Homology (786 aa)
 
          0.535
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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