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CN09_06150 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_06150" - 3-demethylubiquinone-9 3-methyltransferase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_061503-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)    
Predicted Functional Partners:
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
              0.786
CN09_06305
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source (559 aa)
              0.734
CN09_06155
Usg; Derived by automated computational analysis using gene prediction method- Protein Homology (88 aa)
              0.606
CN09_08345
Exopolysaccharide production negative regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)
 
          0.602
CN09_03985
Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method- Protein Homology (729 aa)
 
          0.549
CN09_06145
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (230 aa)
              0.549
CN09_06140
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (114 aa)
              0.548
CN09_06135
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
              0.548
CN09_10415
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (152 aa)
 
          0.541
CN09_08925
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (97 aa)
   
          0.537
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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