STRINGSTRING
rpiA protein (Agrobacterium rhizogenes) - STRING interaction network
"rpiA" - Ribose-5-phosphate isomerase A in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpiARibose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate (233 aa)    
Predicted Functional Partners:
ispDF
Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) (406 aa)
   
        0.999
CN09_02210
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate (660 aa)
 
 
  0.956
CN09_15770
6-phosphogluconolactonase; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
 
     
  0.943
pgi
Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GPI family (541 aa)
   
   
  0.942
CN09_15935
Gluconokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (175 aa)
            0.928
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (321 aa)
   
   
  0.925
CN09_06265
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (190 aa)
              0.922
CN09_06270
Glutathione reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family (461 aa)
 
 
  0.913
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
         
  0.886
CN09_06255
Phosphoglycolate phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
   
        0.877
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (13%) [HD]