STRINGSTRING
CN09_06355 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_06355" - ABC transporter in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_06355ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)    
Predicted Functional Partners:
CN09_06340
Toluene ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
     
  0.996
CN09_06345
Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (287 aa)
 
   
  0.991
CN09_06350
Organic solvent ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (456 aa)
 
  0.987
CN09_06325
Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method- Protein Homology (770 aa)
              0.794
CN09_14585
Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method- Protein Homology (761 aa)
              0.761
CN09_06330
Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
              0.517
CN09_28075
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (532 aa)
   
          0.517
CN09_06510
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (871 aa)
 
          0.509
queE
7-carboxy-7-deazaguanine synthase; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds (245 aa)
              0.497
CN09_28445
Protein kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (151 aa)
 
          0.496
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (6%) [HD]