CN09_06395 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_06395

ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily (363 aa)

Predicted Functional Partners:

CN09_06385

0.982

CN09_06390

0.958

CN09_06400

0.794

CN09_06375

0.740

CN09_20370

0.695

CN09_20365

0.642

CN09_26185

0.639

CN09_21445

0.636

CN09_25075

0.634

CN09_23455

0.632

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_06375	CN09_06385	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.903
CN09_06375	CN09_06390	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.905
CN09_06375	CN09_06395	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.740
CN09_06375	CN09_06400	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.640
CN09_06375	CN09_20365	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.798
CN09_06375	CN09_20370	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.821
CN09_06385	CN09_06375	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.903
CN09_06385	CN09_06390	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.981
CN09_06385	CN09_06395	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.982
CN09_06385	CN09_06400	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.727
CN09_06385	CN09_20370	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.866
CN09_06385	CN09_21445	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.657
CN09_06385	CN09_23455	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.617
CN09_06385	CN09_25075	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.682
CN09_06385	CN09_26185	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.594
CN09_06390	CN09_06375	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.905
CN09_06390	CN09_06385	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.981
CN09_06390	CN09_06395	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.958
CN09_06390	CN09_06400	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.720
CN09_06390	CN09_20365	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.847