CN09_06425 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

CN09_06425

Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (109 aa)

Predicted Functional Partners:

CN09_10585

0.616

CN09_06420

0.518

CN09_06015

0.516

CN09_06430

0.476

CN09_10580

0.465

macB

0.453

CN09_10280

0.423

CN09_06360

0.414

CN09_02510

0.404

CN09_08350

0.401

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_02510	CN09_06425	CN09_02510	CN09_06425	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.404
CN09_02510	CN09_10585	CN09_02510	CN09_10585	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.546
CN09_06015	CN09_06425	CN09_06015	CN09_06425	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.516
CN09_06015	CN09_10280	CN09_06015	CN09_10280	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.406
CN09_06015	CN09_10585	CN09_06015	CN09_10585	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.515
CN09_06360	CN09_06425	CN09_06360	CN09_06425	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.414
CN09_06360	CN09_10585	CN09_06360	CN09_10585	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.412
CN09_06420	CN09_06425	CN09_06420	CN09_06425	Beta-xylosidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 43 family	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.518
CN09_06425	CN09_02510	CN09_06425	CN09_02510	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.404
CN09_06425	CN09_06015	CN09_06425	CN09_06015	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.516
CN09_06425	CN09_06360	CN09_06425	CN09_06360	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.414
CN09_06425	CN09_06420	CN09_06425	CN09_06420	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Beta-xylosidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 43 family	0.518
CN09_06425	CN09_06430	CN09_06425	CN09_06430	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.476
CN09_06425	CN09_08350	CN09_06425	CN09_08350	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Long-chain fatty acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.401
CN09_06425	CN09_10280	CN09_06425	CN09_10280	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.423
CN09_06425	CN09_10580	CN09_06425	CN09_10580	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.465
CN09_06425	CN09_10585	CN09_06425	CN09_10585	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.616
CN09_06425	macB	CN09_06425	CN09_25550	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides	0.453
CN09_06430	CN09_06425	CN09_06430	CN09_06425	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.476
CN09_08350	CN09_06425	CN09_08350	CN09_06425	Long-chain fatty acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.401

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