STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_064502Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology (106 aa)    
Predicted Functional Partners:
CN09_06825
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.998
CN09_07090
Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.996
gltD
Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.989
CN09_03215
Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.987
tsaE
Chlorosome protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.983
addB
Recombinase RecB; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.979
CN09_10110
Belongs to the cytochrome P450 family
   
 0.965
CN09_17450
Belongs to the cytochrome P450 family
   
 0.963
CN09_19375
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family
   
 0.963
CN09_19380
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family
   
 0.963
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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