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CN09_06640 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_06640" - Membrane protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_06640Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)    
Predicted Functional Partners:
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
 
   
  0.879
CN09_16135
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (182 aa)
   
          0.780
CN09_12400
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)
 
          0.776
CN09_17450
Cytochrome P450; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the cytochrome P450 family (464 aa)
     
 
  0.769
CN09_06920
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
   
          0.752
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the KdsA family (279 aa)
              0.744
CN09_12955
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (221 aa)
   
          0.730
CN09_07645
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)
              0.714
CN09_08155
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)
   
          0.695
CN09_27530
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (337 aa)
   
          0.694
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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