Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CN09_06905 | CN09_06910 | CN09_06905 | CN09_06910 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.969 |
| CN09_06905 | CN09_06915 | CN09_06905 | CN09_06915 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.977 |
| CN09_06905 | CN09_06925 | CN09_06905 | CN09_06925 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.866 |
| CN09_06905 | CN09_08705 | CN09_06905 | CN09_08705 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.922 |
| CN09_06905 | ribB | CN09_06905 | CN09_16765 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate | 0.928 |
| CN09_06905 | rplC | CN09_06905 | CN09_08895 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.878 |
| CN09_06905 | rplO | CN09_06905 | CN09_08800 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 50S ribosomal protein L15; Binds to the 23S rRNA | 0.894 |
| CN09_06905 | rplV | CN09_06905 | CN09_08870 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome | 0.870 |
| CN09_06905 | rpsE | CN09_06905 | CN09_08810 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Small subunit ribosomal protein s5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body | 0.879 |
| CN09_06905 | rpsG | CN09_06905 | CN09_08915 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA | 0.868 |
| CN09_06910 | CN09_06905 | CN09_06910 | CN09_06905 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 0.969 |
| CN09_06910 | CN09_06915 | CN09_06910 | CN09_06915 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.954 |
| CN09_06910 | CN09_06925 | CN09_06910 | CN09_06925 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | Methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.868 |
| CN09_06910 | CN09_08705 | CN09_06910 | CN09_08705 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.824 |
| CN09_06910 | ribB | CN09_06910 | CN09_16765 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate | 0.862 |
| CN09_06915 | CN09_06905 | CN09_06915 | CN09_06905 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 0.977 |
| CN09_06915 | CN09_06910 | CN09_06915 | CN09_06910 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.954 |
| CN09_06915 | CN09_06925 | CN09_06915 | CN09_06925 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology | Methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.870 |
| CN09_06915 | CN09_08705 | CN09_06915 | CN09_08705 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.824 |
| CN09_06915 | rplC | CN09_06915 | CN09_08895 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.401 |
page 1 of 4
