CN09_06915 protein (Agrobacterium rhizogenes)

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

CN09_06915

ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)

Predicted Functional Partners:

CN09_06905

0.975

CN09_06910

0.952

rplQ

0.946

CN09_16300

0.876

CN09_06925

0.857

CN09_08705

0.822

CN09_08710

0.795

CN09_08715

0.778

rpmB

0.770

rpoA

0.749

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_06905	CN09_06910	CN09_06905	CN09_06910	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.968
CN09_06905	CN09_06915	CN09_06905	CN09_06915	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.975
CN09_06905	CN09_06925	CN09_06905	CN09_06925	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	Methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.854
CN09_06905	CN09_08705	CN09_06905	CN09_08705	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.922
CN09_06905	CN09_08710	CN09_06905	CN09_08710	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.801
CN09_06905	CN09_08715	CN09_06905	CN09_08715	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S1C family	0.744
CN09_06905	CN09_16300	CN09_06905	CN09_16300	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family	0.725
CN09_06905	rplQ	CN09_06905	CN09_08770	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method- Protein Homology	0.826
CN09_06905	rpoA	CN09_06905	CN09_08775	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.830
CN09_06910	CN09_06905	CN09_06910	CN09_06905	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	0.968
CN09_06910	CN09_06915	CN09_06910	CN09_06915	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.952
CN09_06910	CN09_06925	CN09_06910	CN09_06925	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.854
CN09_06910	CN09_08705	CN09_06910	CN09_08705	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.822
CN09_06910	CN09_08710	CN09_06910	CN09_08710	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.750
CN09_06910	CN09_08715	CN09_06910	CN09_08715	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S1C family	0.744
CN09_06910	CN09_16300	CN09_06910	CN09_16300	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family	0.777
CN09_06910	rplQ	CN09_06910	CN09_08770	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method- Protein Homology	0.740
CN09_06910	rpoA	CN09_06910	CN09_08775	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.676
CN09_06915	CN09_06905	CN09_06915	CN09_06905	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	0.975
CN09_06915	CN09_06910	CN09_06915	CN09_06910	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.952

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