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CN09_06915 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_06915" - ATPase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_06915ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)    
Predicted Functional Partners:
CN09_06905
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (332 aa)
 
        0.975
CN09_06910
HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (217 aa)
              0.952
rplQ
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method- Protein Homology (140 aa)
   
        0.946
CN09_16300
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (606 aa)
              0.876
CN09_06925
Methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (510 aa)
       
  0.857
CN09_08705
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (110 aa)
              0.822
CN09_08710
ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology (438 aa)
 
          0.795
CN09_08715
Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S1C family (467 aa)
 
          0.778
rpmB
50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bL28 family (101 aa)
     
        0.770
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (336 aa)
   
        0.749
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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