Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CN09_06905 | CN09_06910 | CN09_06905 | CN09_06910 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.969 |
| CN09_06905 | CN09_06915 | CN09_06905 | CN09_06915 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.977 |
| CN09_06905 | CN09_06925 | CN09_06905 | CN09_06925 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.866 |
| CN09_06905 | CN09_08705 | CN09_06905 | CN09_08705 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.922 |
| CN09_06905 | CN09_08710 | CN09_06905 | CN09_08710 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.810 |
| CN09_06905 | CN09_08715 | CN09_06905 | CN09_08715 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Serine protease; Belongs to the peptidase S1C family | 0.757 |
| CN09_06905 | CN09_11090 | CN09_06905 | CN09_11090 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.756 |
| CN09_06905 | CN09_16300 | CN09_06905 | CN09_16300 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Potassium transporter trka; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family | 0.737 |
| CN09_06905 | rplQ | CN09_06905 | CN09_08770 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.835 |
| CN09_06905 | rpoA | CN09_06905 | CN09_08775 | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | Dna-directed rna polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.856 |
| CN09_06910 | CN09_06905 | CN09_06910 | CN09_06905 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil | 0.969 |
| CN09_06910 | CN09_06915 | CN09_06910 | CN09_06915 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.954 |
| CN09_06910 | CN09_06925 | CN09_06910 | CN09_06925 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | Methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.868 |
| CN09_06910 | CN09_08705 | CN09_06910 | CN09_08705 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.824 |
| CN09_06910 | CN09_08710 | CN09_06910 | CN09_08710 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.761 |
| CN09_06910 | CN09_08715 | CN09_06910 | CN09_08715 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | Serine protease; Belongs to the peptidase S1C family | 0.762 |
| CN09_06910 | CN09_11090 | CN09_06910 | CN09_11090 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.756 |
| CN09_06910 | CN09_16300 | CN09_06910 | CN09_16300 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | Potassium transporter trka; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family | 0.780 |
| CN09_06910 | rplQ | CN09_06910 | CN09_08770 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.754 |
| CN09_06910 | rpoA | CN09_06910 | CN09_08775 | HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology | Dna-directed rna polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.662 |
page 1 of 4
