STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_06945UPF0178 protein CN09_06945; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0178 family (154 aa)    
Predicted Functional Partners:
CN09_13785
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.999
CN09_06940
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde
 
 
   0.963
CN09_06950
S-(hydroxymethyl)glutathione dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily
       0.895
CN09_15790
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.798
CN09_29345
Elongation factor 3; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
   0.793
CN09_17515
Peptide chain release factor I; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.780
CN09_07640
Malonate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
CN09_17045
2-haloalkanoic acid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
CN09_17410
Ornithine cyclodeaminase; Catalyzes the formation of L-proline from L-ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
CN09_12395
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.731
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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