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CN09_06980 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_06980" - Signal peptide protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_06980Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (167 aa)    
Predicted Functional Partners:
CN09_28470
Nitrogen regulatory protein P-II 1; Indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; Derived by automated computational analysis using gene prediction method- Protein Homology (116 aa)
              0.744
CN09_28465
Ammonium transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (453 aa)
              0.744
CN09_28480
2-octaprenyl-6-methoxyphenyl hydroxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (404 aa)
              0.656
CN09_14035
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (146 aa)
   
          0.644
CN09_07290
NADH-ubiquinone oxidoreductase subunit E; Derived by automated computational analysis using gene prediction method- Protein Homology (98 aa)
 
          0.642
CN09_10195
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (457 aa)
   
          0.559
CN09_09000
5’-nucleotidase; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)
   
          0.421
CN09_04050
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (65 aa)
   
          0.418
CN09_25415
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (175 aa)
   
          0.417
CN09_25195
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (532 aa)
   
          0.406
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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