CN09_07000 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_07000

Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)

Predicted Functional Partners:

CN09_07005

0.940

CN09_25200

0.671

CN09_07010

0.668

recF

0.636

CN09_01610

0.602

CN09_01600

0.599

CN09_11985

0.538

CN09_15290

0.496

CN09_06965

0.468

CN09_04630

0.459

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01600	CN09_01610	CN09_01600	CN09_01610	NAD(P) transhydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology	NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane	0.999
CN09_01600	CN09_07000	CN09_01600	CN09_07000	NAD(P) transhydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.599
CN09_01610	CN09_01600	CN09_01610	CN09_01600	NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane	NAD(P) transhydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_01610	CN09_07000	CN09_01610	CN09_07000	NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.602
CN09_04630	CN09_06965	CN09_04630	CN09_06965	Repressor; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.707
CN09_04630	CN09_07000	CN09_04630	CN09_07000	Repressor; Derived by automated computational analysis using gene prediction method- Protein Homology	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.459
CN09_04630	CN09_11985	CN09_04630	CN09_11985	Repressor; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.732
CN09_04630	CN09_15290	CN09_04630	CN09_15290	Repressor; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.560
CN09_06965	CN09_04630	CN09_06965	CN09_04630	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Repressor; Derived by automated computational analysis using gene prediction method- Protein Homology	0.707
CN09_06965	CN09_07000	CN09_06965	CN09_07000	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.468
CN09_06965	CN09_11985	CN09_06965	CN09_11985	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.640
CN09_06965	CN09_15290	CN09_06965	CN09_15290	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.439
CN09_07000	CN09_01600	CN09_07000	CN09_01600	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	NAD(P) transhydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology	0.599
CN09_07000	CN09_01610	CN09_07000	CN09_01610	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane	0.602
CN09_07000	CN09_04630	CN09_07000	CN09_04630	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Repressor; Derived by automated computational analysis using gene prediction method- Protein Homology	0.459
CN09_07000	CN09_06965	CN09_07000	CN09_06965	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.468
CN09_07000	CN09_07005	CN09_07000	CN09_07005	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.940
CN09_07000	CN09_07010	CN09_07000	CN09_07010	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.668
CN09_07000	CN09_11985	CN09_07000	CN09_11985	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.538
CN09_07000	CN09_15290	CN09_07000	CN09_15290	Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.496

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About