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CN09_07010 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_07010" - Membrane protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_07010Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (230 aa)    
Predicted Functional Partners:
CN09_16095
Glycolate oxidase subunit GlcD; Derived by automated computational analysis using gene prediction method- Protein Homology (479 aa)
              0.744
CN09_16100
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (399 aa)
              0.733
CN09_16105
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (439 aa)
              0.729
CN09_07005
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
              0.724
CN09_07000
Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)
              0.668
CN09_10850
Permease; Derived by automated computational analysis using gene prediction method- Protein Homology (303 aa)
              0.614
CN09_07015
Serine dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (468 aa)
              0.568
CN09_07025
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (144 aa)
 
          0.536
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions (178 aa)
              0.506
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity (629 aa)
              0.461
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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