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CN09_07035 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_07035" - D-alanyl-D-alanine carboxypeptidase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_07035D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S11 family (504 aa)    
Predicted Functional Partners:
CN09_07040
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
              0.972
CN09_08270
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (572 aa)
         
  0.708
guaB
Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family (494 aa)
         
  0.602
CN09_07030
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (91 aa)
              0.594
CN09_05030
Cell division protein FtsW; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SEDS family (384 aa)
 
 
 
  0.568
CN09_16635
Cell division protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FtsK/SpoIIIE/SftA family (1012 aa)
 
     
  0.514
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (606 aa)
 
     
  0.512
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily (495 aa)
 
 
  0.511
CN09_34145
Nucleoid-associated protein CN09_34145; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection (107 aa)
 
          0.506
CN09_28460
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method- Protein Homology (889 aa)
 
     
  0.491
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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