STRINGSTRING
CN09_07100 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_07100" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_07100Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (176 aa)    
Predicted Functional Partners:
CN09_07095
Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane (142 aa)
              0.886
CN09_07090
Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
              0.871
thrS
Threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction- L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) (662 aa)
              0.560
CN09_06360
Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (132 aa)
 
          0.438
CN09_10585
Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)
   
          0.436
CN09_01390
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
          0.427
CN09_03810
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
 
          0.426
folE
GTP cyclohydrolase 1; Derived by automated computational analysis using gene prediction method- Protein Homology (207 aa)
              0.425
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (13%) [HD]