STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_07135GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology (152 aa)    
Predicted Functional Partners:
CN09_05815
Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
CN09_07130
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.735
CN09_06360
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
      0.729
gatC
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family
       0.651
CN09_13755
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.619
CN09_07120
NAD(P)H nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.517
CN09_07125
Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.497
CN09_08055
NADH-ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.432
CN09_05820
Cobalamin biosynthesis protein CobN; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.429
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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