CN09_07260 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_07260

MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (154 aa)

Predicted Functional Partners:

CN09_07270

0.954

CN09_07265

0.947

CN09_01565

0.560

CN09_31765

0.530

CN09_02520

0.447

CN09_31770

0.444

CN09_07255

0.441

CN09_01400

0.419

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 2

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_01400	CN09_07260	Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.419
CN09_01400	CN09_07270	Derived by automated computational analysis using gene prediction method: Protein Homology	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily	0.797
CN09_01400	CN09_31765	Derived by automated computational analysis using gene prediction method: Protein Homology	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily	0.843
CN09_01565	CN09_07260	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.560
CN09_02520	CN09_07260	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.447
CN09_07255	CN09_07260	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.441
CN09_07255	CN09_07265	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology	0.510
CN09_07255	CN09_07270	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily	0.460
CN09_07260	CN09_01400	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Derived by automated computational analysis using gene prediction method: Protein Homology	0.419
CN09_07260	CN09_01565	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.560
CN09_07260	CN09_02520	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.447
CN09_07260	CN09_07255	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.441
CN09_07260	CN09_07265	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology	0.947
CN09_07260	CN09_07270	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily	0.954
CN09_07260	CN09_31765	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily	0.530
CN09_07260	CN09_31770	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Derived by automated computational analysis using gene prediction method: Protein Homology	0.444
CN09_07265	CN09_07255	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.510
CN09_07265	CN09_07260	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.947
CN09_07265	CN09_07270	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily	0.976
CN09_07265	CN09_31765	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily	0.827