STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_07325LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (260 aa)    
Predicted Functional Partners:
polA
In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
 
 
 0.999
metG
Methionine--trna ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
 
   0.998
CN09_07330
PhnP; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.998
CN09_08270
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.993
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.981
secF
Preprotein translocase subunit secd/secf; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
 
   
 0.967
secD
Preprotein translocase subunit secd/secf; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
 
   
 0.967
CN09_16300
Potassium transporter trka; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
       0.963
CN09_07335
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.952
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.951
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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