Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CN09_07490 | CN09_28465 | CN09_07490 | CN09_28465 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Ammonia channel protein; Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.997 |
| CN09_07490 | glnA | CN09_07490 | CN09_07495 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.992 |
| CN09_07490 | glnD | CN09_07490 | CN09_14600 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Protein-pii uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism | 0.947 |
| CN09_07490 | glnE | CN09_07490 | CN09_11815 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of [...] | 0.882 |
| CN09_07490 | gltB | CN09_07490 | CN09_01825 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
| CN09_07490 | nnrD | CN09_07490 | CN09_07485 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.988 |
| CN09_28465 | CN09_07490 | CN09_28465 | CN09_07490 | Ammonia channel protein; Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | 0.997 |
| CN09_28465 | CN09_28470 | CN09_28465 | CN09_28470 | Ammonia channel protein; Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | 0.999 |
| CN09_28465 | glnA | CN09_28465 | CN09_07495 | Ammonia channel protein; Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology | Forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.906 |
| CN09_28465 | glnD | CN09_28465 | CN09_14600 | Ammonia channel protein; Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology | Protein-pii uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism | 0.959 |
| CN09_28465 | glnE | CN09_28465 | CN09_11815 | Ammonia channel protein; Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology | Bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of [...] | 0.852 |
| CN09_28465 | gltB | CN09_28465 | CN09_01825 | Ammonia channel protein; Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
| CN09_28465 | gltD | CN09_28465 | CN09_01830 | Ammonia channel protein; Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology | Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.688 |
| CN09_28470 | CN09_28465 | CN09_28470 | CN09_28465 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Ammonia channel protein; Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
| CN09_28470 | glnA | CN09_28470 | CN09_07495 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.903 |
| CN09_28470 | glnD | CN09_28470 | CN09_14600 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Protein-pii uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism | 0.798 |
| CN09_28470 | glnE | CN09_28470 | CN09_11815 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of [...] | 0.607 |
| CN09_28470 | gltB | CN09_28470 | CN09_01825 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
| CN09_28470 | nnrD | CN09_28470 | CN09_07485 | Nitrogen regulatory protein p-ii 1; Belongs to the P(II) protein family | Hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.983 |
| atpD | glnA | CN09_27875 | CN09_07495 | Atp synthase f0f1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits | Forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.833 |
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