STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_07930ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology (275 aa)    
Predicted Functional Partners:
CN09_07935
Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.890
CN09_07940
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.890
CN09_07945
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.890
CN09_07950
HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.843
rpsB
30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family
       0.830
CN09_14535
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.759
aspS
Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn)
       0.756
CN09_11895
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.740
CN09_11890
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.732
CN09_06505
Flagellar biosynthesis protein FliO; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.730
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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