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CN09_07965 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_07965" - Phasin family protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_07965Phasin family protein; Derived by automated computational analysis using gene prediction method- Protein Homology (122 aa)    
Predicted Functional Partners:
clpA
Clp protease ClpX; ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ClpA/ClpB family (841 aa)
              0.831
CN09_07960
ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation (117 aa)
              0.830
CN09_15860
Phasin; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)
   
     
  0.772
CN09_05610
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)
 
          0.702
CN09_10935
Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (177 aa)
   
          0.591
CN09_16050
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
   
          0.588
CN09_07975
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (67 aa)
 
          0.534
CN09_07045
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (201 aa)
   
          0.529
CN09_08630
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
   
          0.519
CN09_08165
Poly(3-hydroxyalkanoate) synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (615 aa)
 
     
  0.517
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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