CN09_07985 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_07985

Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)

Predicted Functional Partners:

CN09_00155

0.795

CN09_27460

0.785

CN09_17135

0.755

CN09_06255

0.744

CN09_17345

0.743

CN09_18435

0.737

CN09_31535

0.731

CN09_22620

0.730

CN09_07980

0.730

CN09_28910

0.703

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00155	CN09_07985	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.795
CN09_00155	CN09_17135	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.811
CN09_00155	CN09_17345	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.815
CN09_00155	CN09_18435	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.790
CN09_00155	CN09_22620	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	4-hydroxybutyrate CoA-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.484
CN09_00155	CN09_28910	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method- Protein Homology	0.846
CN09_06255	CN09_07985	Phosphoglycolate phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_07980	CN09_07985	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.730
CN09_07985	CN09_00155	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.795
CN09_07985	CN09_06255	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	Phosphoglycolate phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_07985	CN09_07980	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	Serine acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.730
CN09_07985	CN09_17135	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.755
CN09_07985	CN09_17345	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.743
CN09_07985	CN09_18435	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.737
CN09_07985	CN09_22620	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	4-hydroxybutyrate CoA-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.730
CN09_07985	CN09_27460	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	3-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.785
CN09_07985	CN09_28910	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	Acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method- Protein Homology	0.703
CN09_07985	CN09_31535	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.731
CN09_17135	CN09_00155	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.811
CN09_17135	CN09_07985	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.755