CN09_08030 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CN09_08030

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (79 aa)

Predicted Functional Partners:

CN09_13895

0.576

CN09_06920

0.575

CN09_04140

0.554

CN09_27500

0.546

CN09_17880

0.536

CN09_10245

0.523

CN09_11615

0.520

CN09_09725

0.511

CN09_08240

0.508

CN09_08025

0.508

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

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node1	node2	node1 annotation	node2 annotation	score
CN09_04140	CN09_06920	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.742
CN09_04140	CN09_08030	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.554
CN09_04140	CN09_08240	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.628
CN09_04140	CN09_09725	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.646
CN09_04140	CN09_10245	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.673
CN09_04140	CN09_11615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.601
CN09_04140	CN09_13895	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.585
CN09_04140	CN09_17880	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.607
CN09_04140	CN09_27500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.743
CN09_06920	CN09_04140	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.742
CN09_06920	CN09_08030	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.575
CN09_06920	CN09_08240	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.715
CN09_06920	CN09_09725	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.590
CN09_06920	CN09_10245	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.736
CN09_06920	CN09_11615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.688
CN09_06920	CN09_13895	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.684
CN09_06920	CN09_17880	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.637
CN09_06920	CN09_27500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.777
CN09_08025	CN09_08030	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.508
CN09_08030	CN09_04140	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.554