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CN09_08030 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_08030" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_08030Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (79 aa)    
Predicted Functional Partners:
CN09_13895
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (608 aa)
   
          0.576
CN09_06920
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
   
          0.575
CN09_04140
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (92 aa)
   
          0.554
CN09_27500
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
   
          0.546
CN09_17880
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (77 aa)
   
          0.536
CN09_10245
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (96 aa)
   
          0.523
CN09_11615
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology (133 aa)
   
          0.520
CN09_09725
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)
   
          0.511
CN09_08240
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
   
          0.508
CN09_08025
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (257 aa)
              0.508
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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