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CN09_08070 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_08070" - Cold-shock protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
CN09_08070Cold-shock protein; Derived by automated computational analysis using gene prediction method- Protein Homology (192 aa)    
Predicted Functional Partners:
CN09_08065
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (170 aa)
              0.954
CN09_08075
Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology (146 aa)
         
  0.868
CN09_08055
NADH-ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (101 aa)
              0.827
CN09_07990
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (260 aa)
 
     
  0.784
CN09_04365
Cold-shock protein; Derived by automated computational analysis using gene prediction method- Protein Homology (71 aa)
   
     
  0.757
pdxH
Pyridoxine/pyridoxamine 5’-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5’- phosphate (PNP) or pyridoxamine 5’-phosphate (PMP) into pyridoxal 5’-phosphate (PLP) (206 aa)
         
  0.746
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (888 aa)
     
 
  0.608
gpt
Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily (165 aa)
              0.546
CN09_09705
NADH dehydrogenase; Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; Derived by automated computational analysis using gene prediction method- Protein Homology (132 aa)
              0.527
CN09_12120
Cold-shock protein; Derived by automated computational analysis using gene prediction method- Protein Homology (68 aa)
   
          0.470
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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