CN09_08190 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_08190

Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (467 aa)

Predicted Functional Partners:

CN09_03380

0.994

CN09_17085

0.972

gcvP

0.971

polA

0.850

CN09_24995

0.838

CN09_06240

0.822

CN09_22360

0.816

CN09_23555

0.813

CN09_06940

0.744

CN09_27970

0.735

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_03380	CN09_06240	CN09_03380	CN09_06240	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	0.896
CN09_03380	CN09_08190	CN09_03380	CN09_08190	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.994
CN09_03380	CN09_17085	CN09_03380	CN09_17085	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	0.999
CN09_03380	CN09_22360	CN09_03380	CN09_22360	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_03380	CN09_23555	CN09_03380	CN09_23555	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_03380	CN09_24995	CN09_03380	CN09_24995	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_03380	CN09_27970	CN09_03380	CN09_27970	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2)	0.999
CN09_03380	gcvP	CN09_03380	CN09_06885	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family	0.977
CN09_03380	polA	CN09_03380	CN09_13050	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.918
CN09_06240	CN09_03380	CN09_06240	CN09_03380	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.896
CN09_06240	CN09_08190	CN09_06240	CN09_08190	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.822
CN09_06240	CN09_17085	CN09_06240	CN09_17085	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	0.976
CN09_06240	CN09_22360	CN09_06240	CN09_22360	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.793
CN09_06240	CN09_23555	CN09_06240	CN09_23555	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.498
CN09_06240	CN09_24995	CN09_06240	CN09_24995	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	Acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_06240	CN09_27970	CN09_06240	CN09_27970	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2)	0.880
CN09_06940	CN09_08190	CN09_06940	CN09_08190	S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_06940	CN09_23555	CN09_06940	CN09_23555	S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde	Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.437
CN09_08190	CN09_03380	CN09_08190	CN09_03380	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.994
CN09_08190	CN09_06240	CN09_08190	CN09_06240	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	0.822

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About