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CN09_08360 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_08360" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_08360Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)    
Predicted Functional Partners:
valS
Valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily (947 aa)
              0.936
CN09_08365
Protein-L-isoaspartate O-methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
              0.789
CN09_07130
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (384 aa)
   
          0.762
CN09_08320
Sporulation protein; Derived by automated computational analysis using gene prediction method- Protein Homology (929 aa)
 
          0.728
CN09_13470
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (192 aa)
   
          0.724
CN09_15625
Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (535 aa)
   
          0.712
CN09_13475
Pilus assembly protein TadG; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
   
          0.710
CN09_28065
Uroporphyrinogen III synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
 
          0.698
CN09_13505
Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology (235 aa)
   
          0.678
CN09_01855
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (500 aa)
   
          0.676
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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