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cpdB protein (Agrobacterium rhizogenes) - STRING interaction network
"cpdB" - Periplasmic enzyme in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
cpdBPeriplasmic enzyme; functions during ribonucleic acid degradation; 2’,3’-cyclic nucleotides are first converted to 3’-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the 5’-nucleotidase family (662 aa)    
Predicted Functional Partners:
CN09_01885
5’-nucleotidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the 5’-nucleotidase family (681 aa)
     
0.922
CN09_04070
Metallophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (301 aa)
         
  0.844
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
   
        0.726
CN09_34130
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
              0.711
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
         
  0.588
CN09_05535
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (420 aa)
              0.578
guaB
Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family (494 aa)
         
  0.561
CN09_03000
3’-5’-bisphosphate nucleotidase; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)
         
  0.558
CN09_08500
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology (119 aa)
              0.543
pheT
Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily (807 aa)
              0.523
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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