STRINGSTRING
CN09_08610 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_08610" - MerR family transcriptional regulator in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_08610MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (140 aa)    
Predicted Functional Partners:
CN09_10900
UPF0060 membrane protein CN09_10900; Derived by automated computational analysis using gene prediction method- Protein Homology (106 aa)
 
          0.821
CN09_08615
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (762 aa)
     
  0.814
CN09_12055
Cation transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (321 aa)
         
  0.747
CN09_25200
Cobalt transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (194 aa)
 
     
  0.723
CN09_16300
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the monovalent cation-proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (606 aa)
 
     
  0.698
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family (167 aa)
 
     
  0.691
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (717 aa)
         
  0.577
pheT
Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily (807 aa)
              0.566
CN09_18140
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
              0.547
CN09_28895
Copper ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (832 aa)
     
  0.487
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (8%) [HD]