CN09_08720 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_08720

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (121 aa)

Predicted Functional Partners:

CN09_07710

0.887

CN09_08710

0.677

CN09_08715

0.567

CN09_27530

0.565

CN09_06920

0.494

CN09_10245

0.492

CN09_34260

0.489

CN09_26475

0.483

CN09_28035

0.483

CN09_04870

0.462

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_04870	CN09_06920	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.551
CN09_04870	CN09_08720	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.462
CN09_04870	CN09_26475	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Regulatory protein RecX; Modulates RecA activity	0.475
CN09_04870	CN09_27530	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.707
CN09_04870	CN09_34260	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.705
CN09_06920	CN09_04870	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.551
CN09_06920	CN09_08720	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.494
CN09_06920	CN09_10245	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.736
CN09_06920	CN09_26475	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Regulatory protein RecX; Modulates RecA activity	0.562
CN09_06920	CN09_27530	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.639
CN09_06920	CN09_34260	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.598
CN09_07710	CN09_08710	Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme; In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_07710	CN09_08720	Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme; In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.887
CN09_08710	CN09_07710	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology	Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme; In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family	0.999
CN09_08710	CN09_08715	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology	Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S1C family	0.954
CN09_08710	CN09_08720	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.677
CN09_08710	CN09_10245	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.543
CN09_08710	CN09_26475	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology	Regulatory protein RecX; Modulates RecA activity	0.626
CN09_08715	CN09_08710	Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S1C family	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.954
CN09_08715	CN09_08720	Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S1C family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.567