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CN09_08760 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_08760" - Membrane protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_08760Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (132 aa)    
Predicted Functional Partners:
CN09_08765
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)
 
          0.733
CN09_08755
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
         
  0.588
CN09_08740
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (296 aa)
         
  0.582
CN09_08750
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (690 aa)
         
  0.565
CN09_08745
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (69 aa)
              0.561
CN09_07190
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (177 aa)
   
     
  0.486
CN09_20925
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)
 
     
  0.468
CN09_15690
Rod-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (198 aa)
 
          0.456
CN09_14185
Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (167 aa)
   
          0.453
CN09_07195
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (619 aa)
 
 
  0.452
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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