CN09_09035 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_09035

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (99 aa)

Predicted Functional Partners:

CN09_10955

0.582

CN09_24905

0.578

CN09_25560

0.576

CN09_22470

0.559

CN09_09040

0.555

CN09_05825

0.548

CN09_03935

0.506

CN09_27910

0.498

CN09_14180

0.487

CN09_20090

0.471

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03935	CN09_05825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.683
CN09_03935	CN09_09035	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.506
CN09_03935	CN09_10955	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.520
CN09_03935	CN09_14180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.674
CN09_03935	CN09_20090	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.764
CN09_03935	CN09_22470	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.486
CN09_03935	CN09_25560	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.693
CN09_05825	CN09_03935	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.683
CN09_05825	CN09_09035	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.548
CN09_05825	CN09_10955	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.569
CN09_05825	CN09_20090	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.440
CN09_05825	CN09_25560	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.602
CN09_09035	CN09_03935	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.506
CN09_09035	CN09_05825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.548
CN09_09035	CN09_09040	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.555
CN09_09035	CN09_10955	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.582
CN09_09035	CN09_14180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.487
CN09_09035	CN09_20090	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.471
CN09_09035	CN09_22470	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.559
CN09_09035	CN09_24905	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.578