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CN09_09740 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_09740" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_09740Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (669 aa)    
Predicted Functional Partners:
CN09_13940
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (173 aa)
   
          0.723
CN09_09745
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (85 aa)
              0.629
CN09_04630
Repressor; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
   
          0.625
CN09_01945
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
   
          0.619
CN09_34570
Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
   
          0.617
hutI
Imidazolonepropionase; Derived by automated computational analysis using gene prediction method- Protein Homology (418 aa)
              0.616
CN09_17200
Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology (225 aa)
   
          0.598
CN09_05180
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
 
          0.594
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (302 aa)
              0.587
CN09_03935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)
   
          0.567
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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