STRINGSTRING
CN09_09865 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_09865" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_09865Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (102 aa)    
Predicted Functional Partners:
CN09_09870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
 
          0.894
CN09_09930
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (92 aa)
   
          0.677
CN09_09860
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology (123 aa)
              0.635
CN09_11915
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (119 aa)
   
          0.625
pleD
Response regulator PleD; Involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; Derived by automated computational analysis using gene prediction method- Protein Homology (457 aa)
              0.583
CN09_04945
S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (415 aa)
   
          0.568
CN09_10545
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (210 aa)
   
          0.552
CN09_10415
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (152 aa)
   
          0.541
CN09_04940
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
   
          0.523
CN09_17535
Serine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (150 aa)
   
          0.520
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (8%) [HD]