CN09_09945 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_09945

Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)

Predicted Functional Partners:

CN09_09940

0.999

CN09_09955

0.999

nuoK

0.999

CN09_09970

0.999

CN09_15290

0.999

CN09_17085

0.999

nuoN

0.998

ribB

0.970

CN09_09960

0.965

guaB

0.955

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_09940	CN09_09945	CN09_09940	CN09_09945	Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_09940	CN09_09955	CN09_09940	CN09_09955	Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-quinone oxidoreductase chain 13; Derived by automated computational analysis using gene prediction method- Protein Homology	0.990
CN09_09940	CN09_09960	CN09_09940	CN09_09960	Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-ubiquinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method- Protein Homology	0.937
CN09_09940	CN09_09970	CN09_09940	CN09_09970	Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-ubiquinone oxidoreductase subunit J; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the complex I subunit 6 family	0.977
CN09_09940	guaB	CN09_09940	CN09_16005	Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology	Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family	0.883
CN09_09940	nuoK	CN09_09940	CN09_09965	Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-quinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family	0.989
CN09_09940	nuoN	CN09_09940	CN09_09950	Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family	0.999
CN09_09945	CN09_09940	CN09_09945	CN09_09940	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_09945	CN09_09955	CN09_09945	CN09_09955	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-quinone oxidoreductase chain 13; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_09945	CN09_09960	CN09_09945	CN09_09960	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-ubiquinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method- Protein Homology	0.965
CN09_09945	CN09_09970	CN09_09945	CN09_09970	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-ubiquinone oxidoreductase subunit J; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the complex I subunit 6 family	0.999
CN09_09945	CN09_15290	CN09_09945	CN09_15290	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_09945	CN09_17085	CN09_09945	CN09_17085	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	0.999
CN09_09945	guaB	CN09_09945	CN09_16005	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family	0.955
CN09_09945	nuoK	CN09_09945	CN09_09965	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-quinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family	0.999
CN09_09945	nuoN	CN09_09945	CN09_09950	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family	0.998
CN09_09945	ribB	CN09_09945	CN09_16765	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family	0.970
CN09_09955	CN09_09940	CN09_09955	CN09_09940	NADH-quinone oxidoreductase chain 13; Derived by automated computational analysis using gene prediction method- Protein Homology	Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.990
CN09_09955	CN09_09945	CN09_09955	CN09_09945	NADH-quinone oxidoreductase chain 13; Derived by automated computational analysis using gene prediction method- Protein Homology	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_09955	CN09_09960	CN09_09955	CN09_09960	NADH-quinone oxidoreductase chain 13; Derived by automated computational analysis using gene prediction method- Protein Homology	NADH-ubiquinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About