CN09_10130 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_10130

Phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import (341 aa)

Predicted Functional Partners:

pstC

0.989

CN09_10120

0.981

CN09_15120

0.941

CN09_10115

0.898

CN09_15290

0.898

CN09_15125

0.897

CN09_15095

0.883

ribB

0.879

CN09_15105

0.878

guaA

0.865

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_10115	CN09_10120	CN09_10115	CN09_10120	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family	Phosphate transport system permease protein PstA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.968
CN09_10115	CN09_10130	CN09_10115	CN09_10130	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family	Phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import	0.898
CN09_10115	CN09_15095	CN09_10115	CN09_15095	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.592
CN09_10115	CN09_15105	CN09_10115	CN09_15105	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family	Phosphate transport system permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane	0.693
CN09_10115	CN09_15120	CN09_10115	CN09_15120	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family	Phosphate-specific transport system accessory protein PhoU; Plays a role in the regulation of phosphate uptake	0.914
CN09_10115	CN09_15125	CN09_10115	CN09_15125	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology	0.583
CN09_10115	CN09_15290	CN09_10115	CN09_15290	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.695
CN09_10115	guaA	CN09_10115	CN09_14055	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP	0.894
CN09_10115	pstC	CN09_10115	CN09_10125	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family	Phosphate transport system permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane	0.934
CN09_10115	ribB	CN09_10115	CN09_16765	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family	0.459
CN09_10120	CN09_10115	CN09_10120	CN09_10115	Phosphate transport system permease protein PstA; Derived by automated computational analysis using gene prediction method- Protein Homology	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family	0.968
CN09_10120	CN09_10130	CN09_10120	CN09_10130	Phosphate transport system permease protein PstA; Derived by automated computational analysis using gene prediction method- Protein Homology	Phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import	0.981
CN09_10120	CN09_15095	CN09_10120	CN09_15095	Phosphate transport system permease protein PstA; Derived by automated computational analysis using gene prediction method- Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.602
CN09_10120	CN09_15105	CN09_10120	CN09_15105	Phosphate transport system permease protein PstA; Derived by automated computational analysis using gene prediction method- Protein Homology	Phosphate transport system permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane	0.933
CN09_10120	CN09_15120	CN09_10120	CN09_15120	Phosphate transport system permease protein PstA; Derived by automated computational analysis using gene prediction method- Protein Homology	Phosphate-specific transport system accessory protein PhoU; Plays a role in the regulation of phosphate uptake	0.934
CN09_10120	CN09_15125	CN09_10120	CN09_15125	Phosphate transport system permease protein PstA; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology	0.612
CN09_10120	CN09_15290	CN09_10120	CN09_15290	Phosphate transport system permease protein PstA; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.828
CN09_10120	guaA	CN09_10120	CN09_14055	Phosphate transport system permease protein PstA; Derived by automated computational analysis using gene prediction method- Protein Homology	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP	0.860
CN09_10120	pstC	CN09_10120	CN09_10125	Phosphate transport system permease protein PstA; Derived by automated computational analysis using gene prediction method- Protein Homology	Phosphate transport system permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane	0.997
CN09_10120	ribB	CN09_10120	CN09_16765	Phosphate transport system permease protein PstA; Derived by automated computational analysis using gene prediction method- Protein Homology	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family	0.863

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About