STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_10470Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology (463 aa)    
Predicted Functional Partners:
rnd
Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family
     
 0.977
CN09_14085
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.868
CN09_28900
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.863
CN09_14080
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.854
CN09_14095
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.843
CN09_14090
Thiol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.821
CN09_28895
Copper ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.810
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
     
 0.777
CN09_01960
Cu resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.740
CN09_06870
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.711
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (10%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >