STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_10480Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology (350 aa)    
Predicted Functional Partners:
CN09_02690
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
   
 0.762
CN09_05970
Guanylyl cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.703
CN09_31760
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.700
CN09_06615
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
   
 0.637
CN09_23865
Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.594
CN09_12530
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
   0.566
CN09_10485
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.541
rnd
Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family
       0.537
CN09_23945
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.516
CN09_23915
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.507
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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