CN09_10730 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_10730

Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology (277 aa)

Predicted Functional Partners:

CN09_24510

0.753

CN09_24540

0.721

CN09_24545

0.718

CN09_10735

0.697

CN09_20385

0.695

CN09_24515

0.695

CN09_24555

0.695

CN09_16530

0.692

CN09_30500

0.677

CN09_16040

0.674

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 5

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2022

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_10730	CN09_10735	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	0.697
CN09_10730	CN09_16040	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.674
CN09_10730	CN09_16530	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.692
CN09_10730	CN09_20385	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.695
CN09_10730	CN09_24510	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.753
CN09_10730	CN09_24515	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.695
CN09_10730	CN09_24540	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.721
CN09_10730	CN09_24545	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.718
CN09_10730	CN09_24555	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	1,3-beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.695
CN09_10730	CN09_30500	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.677
CN09_10735	CN09_10730	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.697
CN09_16040	CN09_10730	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.674
CN09_16040	CN09_16530	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.601
CN09_16040	CN09_20385	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.590
CN09_16040	CN09_24510	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.622
CN09_16040	CN09_24540	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.563
CN09_16040	CN09_24545	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.464
CN09_16040	CN09_30500	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.719
CN09_16530	CN09_10730	Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.692
CN09_16530	CN09_16040	Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.601