CN09_10760 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

co-expression

protein homology

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Score

CN09_10760

Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)

Predicted Functional Partners:

rplI

0.938

rpsR

0.808

rpsF

0.803

CN09_16650

0.765

CN09_17100

0.757

CN09_15750

0.755

CN09_12545

0.754

CN09_08240

0.753

CN09_15450

0.752

CN09_15685

0.751

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_08240	CN09_10760	CN09_08240	CN09_10760	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.753
CN09_08240	CN09_12545	CN09_08240	CN09_12545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.781
CN09_08240	CN09_15450	CN09_08240	CN09_15450	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.782
CN09_08240	CN09_15685	CN09_08240	CN09_15685	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.778
CN09_08240	CN09_15750	CN09_08240	CN09_15750	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.782
CN09_08240	CN09_16650	CN09_08240	CN09_16650	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.784
CN09_08240	CN09_17100	CN09_08240	CN09_17100	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.737
CN09_10760	CN09_08240	CN09_10760	CN09_08240	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.753
CN09_10760	CN09_12545	CN09_10760	CN09_12545	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.754
CN09_10760	CN09_15450	CN09_10760	CN09_15450	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.752
CN09_10760	CN09_15685	CN09_10760	CN09_15685	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.751
CN09_10760	CN09_15750	CN09_10760	CN09_15750	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.755
CN09_10760	CN09_16650	CN09_10760	CN09_16650	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.765
CN09_10760	CN09_17100	CN09_10760	CN09_17100	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.757
CN09_10760	rplI	CN09_10760	CN09_10765	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L9; Binds to the 23S rRNA	0.938
CN09_10760	rpsF	CN09_10760	CN09_10750	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA	0.803
CN09_10760	rpsR	CN09_10760	CN09_10755	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	0.808
CN09_12545	CN09_08240	CN09_12545	CN09_08240	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.781
CN09_12545	CN09_10760	CN09_12545	CN09_10760	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.754
CN09_12545	CN09_15450	CN09_12545	CN09_15450	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.782

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