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CN09_10830 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_10830" - Aldehyde-activating protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_10830Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method- Protein Homology (163 aa)    
Predicted Functional Partners:
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
         
  0.943
CN09_10835
Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
 
       
0.872
CN09_10825
Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method- Protein Homology (159 aa)
 
       
0.864
cysS
Cysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family (463 aa)
              0.863
CN09_10840
Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family (321 aa)
         
  0.861
CN09_10465
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (118 aa)
 
          0.645
CN09_10845
Transferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the alpha-IPM synthase/homocitrate synthase family (538 aa)
              0.639
CN09_10815
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (246 aa)
              0.459
CN09_10850
Permease; Derived by automated computational analysis using gene prediction method- Protein Homology (303 aa)
              0.448
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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