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CN09_10900 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_10900" - UPF0060 membrane protein CN09_10900 in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
CN09_10900UPF0060 membrane protein CN09_10900; Derived by automated computational analysis using gene prediction method- Protein Homology (106 aa)    
Predicted Functional Partners:
CN09_10895
Putative SOS response-associated peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SOS response-associated peptidase family (254 aa)
              0.915
CN09_08610
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (140 aa)
 
          0.821
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
              0.730
CN09_10905
ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Nudix hydrolase family (139 aa)
 
          0.634
CN09_12055
Cation transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (321 aa)
              0.618
clpA
Clp protease ClpX; ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ClpA/ClpB family (841 aa)
              0.602
lipB
Octanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate (238 aa)
              0.572
CN09_25200
Cobalt transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (194 aa)
              0.554
CN09_07720
Nucleoside triphosphate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)
              0.530
CN09_32930
Arsenic transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (418 aa)
              0.503
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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