CN09_10940 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_10940

Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology (219 aa)

Predicted Functional Partners:

CN09_10945

0.546

CN09_11810

0.451

CN09_02960

0.435

CN09_11820

0.417

gmk

0.415

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_02960	CN09_10940	CN09_02960	CN09_10940	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.435
CN09_10940	CN09_02960	CN09_10940	CN09_02960	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.435
CN09_10940	CN09_10945	CN09_10940	CN09_10945	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the Cu-Zn superoxide dismutase family	0.546
CN09_10940	CN09_11810	CN09_10940	CN09_11810	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.451
CN09_10940	CN09_11820	CN09_10940	CN09_11820	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.417
CN09_10940	gmk	CN09_10940	CN09_10690	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP	0.415
CN09_10945	CN09_10940	CN09_10945	CN09_10940	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the Cu-Zn superoxide dismutase family	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.546
CN09_11810	CN09_10940	CN09_11810	CN09_10940	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.451
CN09_11810	CN09_11820	CN09_11810	CN09_11820	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.531
CN09_11820	CN09_10940	CN09_11820	CN09_10940	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.417
CN09_11820	CN09_11810	CN09_11820	CN09_11810	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.531
gmk	CN09_10940	CN09_10690	CN09_10940	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.415

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Fusion

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About