STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_10940Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology (219 aa)    
Predicted Functional Partners:
CN09_02960
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.989
CN09_10945
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems
   
 0.989
CN09_11985
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.986
CN09_01695
Maltodextrin phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
   
  0.985
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP
    
 0.985
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity
    
 0.984
CN09_03695
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.972
CN09_09380
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.972
CN09_11125
Hypothetical protein; Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.972
CN09_17325
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.972
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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