STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_10955Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology (923 aa)    
Predicted Functional Partners:
CN09_10960
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.856
CN09_05750
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.719
CN09_10965
Molybdenum cofactor sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.708
pheT
Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
       0.702
CN09_11985
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.667
CN09_01695
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
       0.606
fbp
Fructose-1,6-bisphosphatase class 1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FBPase class 1 family
       0.605
CN09_05655
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.593
CN09_09035
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.582
CN09_14180
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.582
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (11%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >