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CN09_10975 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_10975" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_10975Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)    
Predicted Functional Partners:
CN09_31580
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (485 aa)
 
 
  0.914
CN09_12395
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (601 aa)
     
 
  0.845
CN09_15420
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology (763 aa)
   
   
  0.788
CN09_01615
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (553 aa)
 
 
  0.769
CN09_03220
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (330 aa)
 
 
  0.758
CN09_19725
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (1199 aa)
     
 
  0.677
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (259 aa)
              0.673
CN09_00240
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (487 aa)
     
 
  0.593
CN09_12285
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (545 aa)
 
          0.521
CN09_15260
Metallophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
 
          0.508
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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