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CN09_11080 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_11080" - Arsenic transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
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[Homology]
Score
CN09_11080Arsenic transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (351 aa)    
Predicted Functional Partners:
CN09_11075
Arsenate reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (141 aa)
 
     
  0.997
CN09_11070
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (120 aa)
 
     
  0.948
CN09_14265
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
   
  0.788
CN09_11065
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (174 aa)
              0.779
CN09_11085
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
 
     
  0.767
CN09_04425
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family (324 aa)
   
   
  0.741
CN09_16230
Chromate transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (481 aa)
         
  0.675
gapA
Glyceraldehyde-3-phosphate dehydrogenase; Required for glycolysis; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family (336 aa)
         
  0.665
CN09_28900
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (128 aa)
         
  0.663
CN09_07645
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)
              0.503
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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