STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_11090Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (210 aa)    
Predicted Functional Partners:
CN09_11095
Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.777
CN09_06905
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil
       0.744
CN09_06910
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
CN09_06915
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
CN09_10540
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
CN09_16645
Threonylcarbamoyl-AMP synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
       0.730
CN09_33210
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0312 family
       0.727
CN09_04975
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.725
CN09_03400
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.710
CN09_28280
2-methylthioadenine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.702
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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