STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_11375Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (711 aa)    
Predicted Functional Partners:
CN09_33540
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.807
CN09_11460
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.786
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication; Belongs to the DnaG primase family
     
 0.709
CN09_11435
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.705
CN09_29685
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+
  
     0.580
CN09_11380
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+
       0.522
CN09_28345
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.498
CN09_22380
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.477
CN09_02830
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.469
CN09_07470
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
       0.431
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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