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CN09_11460 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_11460" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_11460Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)    
Predicted Functional Partners:
CN09_11465
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (92 aa)
              0.851
CN09_11470
Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3’-5’ exonuclease proofreading activity. The beta chain is required for initiation of replication as [...] (352 aa)
              0.850
CN09_11435
DNA helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (589 aa)
 
          0.835
CN09_11375
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (711 aa)
 
          0.786
CN09_05470
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (375 aa)
              0.725
CN09_11480
Phage-associated protein; Derived by automated computational analysis using gene prediction method- Protein Homology (202 aa)
              0.547
CN09_28345
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (120 aa)
   
          0.539
CN09_29685
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (888 aa)
   
          0.535
CN09_11450
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (165 aa)
 
          0.500
CN09_12715
VirB1 type IV secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
   
          0.496
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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